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1

The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

Badouin, Hélène, Gouzy, Jérôme, Grassa, Christopher J., Murat, Florent, Staton, S. Evan, Cottret, Ludovic, Lelandais-Brière, Christine, Owens, Gregory L., Carrère, Sébastien, Mayjonade, Baptiste, Legr

Journal:

Year:

2017

Language:

english

File:

PDF, 5.52 MB

english, 2017

2

An ancestral signalling pathway is conserved in intracellular symbioses-forming plant lineages

Radhakrishnan, Guru V., Keller, Jean, Rich, Melanie K., VerniÃ©, Tatiana, Mbadinga Mbadinga, Duchesse L., Vigneron, Nicolas, Cottret, Ludovic, Clemente, HÃ©lÃ¨ne San, Libourel, Cyril, Cheema, Jitender

Journal:

Year:

2020

File:

PDF, 2.33 MB

2020

3

Use of reconstituted metabolic networks to assist in metabolomic data visualization and mining

Fabien Jourdan, Ludovic Cottret, Laurence Huc, David Wildridge, Richard Scheltema, Anne Hillenweck, Michael P. Barrett, Daniel Zalko, David G. Watson, Laurent Debrauwer

Journal:

Year:

2010

Language:

english

File:

PDF, 790 KB

english, 2010

4

Deciphering the connectivity structure of biological networks using MixNet

Franck Picard, Vincent Miele, Jean-Jacques Daudin, Ludovic Cottret, Stéphane Robin

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.97 MB

english, 2009

5

Metabolic network visualization eliminating node redundance and preserving metabolic pathways

Romain Bourqui, Ludovic Cottret, Vincent Lacroix, David Auber, Patrick Mary, Marie-France Sagot, Fabien Jourdan

Journal:

BMC Systems Biology

Year:

2007

Language:

english

File:

PDF, 1.21 MB

english, 2007

6

Systemic analysis of the symbiotic function of Buchnera aphidicola, the primary endosymbiont of the pea aphid Acyrthosiphon pisum

Lilia Brinza, José Viñuelas, Ludovic Cottret, Federica Calevro, Yvan Rahbé, Gérard Febvay, Gabrielle Duport, Stefano Colella, Andréane Rabatel, Christian Gautier, Jean-Michel Fayard, Marie-France Sago

Journal:

Comptes Rendus Biologies

Year:

2009

File:

PDF, 1.86 MB

2009

7

Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets

Acuña, Vicente, Birmelé, Etienne, Cottret, Ludovic, Crescenzi, Pierluigi, Jourdan, Fabien, Lacroix, Vincent, Marchetti-Spaccamela, Alberto, Marino, Andrea, Milreu, Paulo Vieira, Sagot, Marie-France, S

Journal:

Theoretical Computer Science

Year:

2012

Language:

english

File:

PDF, 335 KB

english, 2012

8

Exploration of the core metabolism of symbiotic bacteria

Klein, Cecilia Coimbra, Cottret, Ludovic, Kielbassa, Janice, Charles, Hubert, Gautier, Christian, Ribeiro de Vasconcelos, Ana Tereza, Lacroix, Vincent, Sagot, Marie-France

Journal:

Year:

2012

Language:

english

File:

PDF, 824 KB

english, 2012

9

Transcriptome database resource and gene expression atlas for the rose

Dubois, Annick, Carrere, Sebastien, Raymond, Olivier, Pouvreau, Benjamin, Cottret, Ludovic, Roccia, Aymeric, Onesto, Jean-Paul, Sakr, Soulaiman, Atanassova, Rossitza, Baudino, Sylvie, Foucher, Fabrice

Journal:

Year:

2012

Language:

english

File:

PDF, 606 KB

english, 2012

10

An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser-capture microdissection coupled to RNA sequencing

Roux, Brice, Rodde, Nathalie, Jardinaud, Marie-Françoise, Timmers, Ton, Sauviac, Laurent, Cottret, Ludovic, Carrère, Sébastien, Sallet, Erika, Courcelle, Emmanuel, Moreau, Sandra, Debellé, Frédéric, C

Journal:

The Plant Journal

Year:

2014

Language:

english

File:

PDF, 1.45 MB

english, 2014

11

Identification and phylogenetic analyses of VASt, an uncharacterized protein domain associated with lipid-binding domains in Eukaryotes

Mehdi Khafif,Ludovic Cottret,Claudine Balagué,Sylvain Raffaele

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 3.01 MB

english, 2014

12

[IEEE ROMAN 2006 - The 15th IEEE International Symposium on Robot and Human Interactive Communication - Univ. of Hertfordshire, Hatfield, UK (2006.09.6-2006.09.8)] ROMAN 2006 - The 15th IEEE International Symposium on Robot and Human Interactive Communication - Rackham: An Interactive Robot-Guide

Clodic, Aurelie, Fleury, Sara, Alami, Rachid, Chatila, Raja, Bailly, Gerard, Brethes, Ludovic, Cottret, Maxime, Danes, Patrick, Dollat, Xavier, Elisei, Frederic, Ferrane, Isabelle, Herrb, Matthieu, In

Year:

2006

Language:

english

File:

PDF, 1.50 MB

english, 2006

13

Graph-Based Analysis of the Metabolic Exchanges between Two Co-Resident Intracellular Symbionts, Baumannia cicadellinicola and Sulcia muelleri, with Their Insect Host, Homalodisca coagulata

Cottret, Ludovic, Milreu, Paulo Vieira, Acuña, Vicente, Marchetti-Spaccamela, Alberto, Stougie, Leen, Charles, Hubert, Sagot, Marie-France, Papin, Jason A.

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 814 KB

english, 2010

14

Graph methods for the investigation of metabolic networks in parasitology

COTTRET, LUDOVIC, JOURDAN, FABIEN

Journal:

Year:

2010

Language:

english

File:

PDF, 484 KB

english, 2010

15

A laser dissection-RNAseq analysis highlights the activation of cytokinin pathways by Nod factors in the Medicago truncatula root epidermis

Jardinaud, Marie-Françoise, Boivin, Stéphane, Rodde, Nathalie, Catrice, Olivier, Kisiala, Anna, Lepage, Agnes, Moreau, Sandra, Roux, Brice, Cottret, Ludovic, Sallet, Erika, Brault, Mathias, Emery, R.J

Journal:

PLANT PHYSIOLOGY

Year:

2016

Language:

english

File:

PDF, 1.48 MB

english, 2016

16

FlexFlux: combining metabolic flux and regulatory network analyses

Marmiesse, Lucas, Peyraud, Rémi, Cottret, Ludovic

Journal:

BMC Systems Biology

Year:

2015

Language:

english

File:

PDF, 2.82 MB

english, 2015

17

Reprogramming of DNA methylation is critical for nodule development in Medicago truncatula

Satgé, Carine, Moreau, Sandra, Sallet, Erika, Lefort, Gaëlle, Auriac, Marie-Christine, Remblière, Céline, Cottret, Ludovic, Gallardo, Karine, Noirot, Céline, Jardinaud, Marie-Françoise, Gamas, Pascal

Journal:

Year:

2016

Language:

english

File:

PDF, 3.92 MB

english, 2016

18

MetExploreViz: web component for interactive metabolic network visualization

Chazalviel, Maxime, Frainay, Clément, Poupin, Nathalie, Vinson, Florence, Merlet, Benjamin, Gloaguen, Yoann, Cottret, Ludovic, Jourdan, Fabien

Journal:

Year:

2018

Language:

english

File:

PDF, 147 KB

english, 2018

19

Control of primary metabolism by a virulence regulatory network promotes robustness in a plant pathogen

Peyraud, Rémi, Cottret, Ludovic, Marmiesse, Lucas, Genin, Stéphane

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 1.30 MB

english, 2018

20

MetExplore: collaborative edition and exploration of metabolic networks

Ludovic, Cottret, Clément, Frainay, Maxime, Chazalviel, Floréal, Cabanettes, Yoann, Gloaguen, Etienne, Camenen, Benjamin, Merlet, Stéphanie, Heux, Jean-Charles, Portais, Nathalie, Poupin, Florence, Vi

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 1.99 MB

english, 2018

21

A Genomic Reappraisal of Symbiotic Function in the Aphid/Buchnera Symbiosis: Reduced Transporter Sets and Variable Membrane Organisations

Charles, Hubert, Balmand, Séverine, Lamelas, Araceli, Cottret, Ludovic, Pérez-Brocal, Vicente, Burdin, Béatrice, Latorre, Amparo, Febvay, Gérard, Colella, Stefano, Calevro, Federica, Rahbé, Yvan, Zilb

Journal:

Year:

2011

Language:

english

File:

PDF, 940 KB

english, 2011

22

Genomic Prediction of Sunflower Hybrids Oil Content

Mangin, Brigitte, Bonnafous, Fanny, Blanchet, Nicolas, Boniface, Marie-Claude, Bret-Mestries, Emmanuelle, Carrère, Sébastien, Cottret, Ludovic, Legrand, Ludovic, Marage, Gwenola, Pegot-Espagnet, Prune

Journal:

Frontiers in Plant Science

Year:

2017

Language:

english

File:

PDF, 602 KB

english, 2017

23

Sunflower resistance to multiple downy mildew pathotypes revealed by recognition of conserved effectors of the oomycete Plasmopara halstedii

Pecrix, Yann, Buendia, Luis, Penouilh-Suzette, Charlotte, Maréchaux, Maude, Legrand, Ludovic, Bouchez, Olivier, Rengel, David, Gouzy, Jérôme, Cottret, Ludovic, Vear, Felicity, Godiard, Laurence

Journal:

The Plant Journal

Year:

2018

Language:

english

File:

PDF, 1.96 MB

english, 2018

24

Computational analysis of the Plasmodiophora brassicae genome: mitochondrial sequence description and metabolic pathway database design

Daval, Stéphanie, Belcour, Arnaud, Gazengel, Kévin, Legrand, Ludovic, Gouzy, Jérôme, Cottret, Ludovic, Lebreton, Lionel, Aigu, Yoann, Mougel, Christophe, Manzanares-Dauleux, Maria J.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.94 MB

english, 2018

25

Evolutionary History of Plant LysM Receptor Proteins Related to Root Endosymbiosis

Gough, Clare, Cottret, Ludovic, Lefebvre, Benoit, Bono, Jean-Jacques

Journal:

Frontiers in Plant Science

Year:

2018

Language:

english

File:

PDF, 3.95 MB

english, 2018

26

Genome-Scale Investigation of the Metabolic Determinants Generating Bacterial Fastidious Growth

Gerlin, LÃ©o, Cottret, Ludovic, Cesbron, Sophie, Taghouti, GÃ©raldine, Jacques, Marie-AgnÃ¨s, Genin, StÃ©phane, Baroukh, Caroline, Elias, Joshua E.

Journal:

Year:

2020

File:

PDF, 846 KB

2020

27

EffectorK, a comprehensive resource to mine for Ralstonia, Xanthomonas, and other published effector interactors in the Arabidopsis proteome

GonzÃ¡lezâFuente, Manuel, CarrÃ¨re, SÃ©bastien, Monachello, Dario, Marsella, Benjamin G., CazalÃ©, AnneâClaire, Zischek, Claudine, Mitra, Raka M., RezÃ©, Nathalie, Cottret, Ludovic, Mukhtar, M. Sh

Journal:

Molecular Plant Pathology

Year:

2020

File:

PDF, 1.01 MB

2020